• RNAStructViz FAQ: Browse a list of commonly asked questions about the application
• First-run instructions: What to expect when running RNAStructViz for the first time
• Screenshots: A visual overview of the GUI application (see also the themes overview)
• Software comparisons: A feature-by-feature chart of RNA secondary structure comparison applications

• 🍎 Mac OSX 10.14 Homebrew (a.k.a. brew) installer instructions are found in these install docs
• 🐧 Linux / BSD / Unix platform instructions for from-source installs are found in these install docs
• 📃 Specific Mac OSX from-source installation instructions are found in these install docs
• 📎 Caveats for the unsupported Windows 10 platform users are explained in these install notes
• 🏫 Installation instructions to build RNAStructViz from a user's local home directory, e.g., for sudo-restricted university lab environments, are found in these install docs

We provide the following links to documentation on the core features of this application:

1. RNA secondary structure visualization. Generate arc diagrams comparing up to three secondary structures using color and transparency. Also includes an export tool allowing generated images to be saved in PNG image format.
2. Statistics comparing multiple predicted structures. Given a reference structure, compare multiple predictions on the same sequence by calculating statistics including number of true positives, false positives, false negatives, sensitivity, selectivity, and positive predictive values. Also generates ROC plots and allows exporting of computed statistics in CSV file format.
3. Full CT file viewer with highlighing. View CT files, with color coding, without leaving RNAStructViz.
4. Limited radial layout viewer. View a selected section of the radial layout diagram for a structure.
5. Customization options and UI themes. Fine tune many aspects of the RNAStructViz user interface. Users with accessibility needs can modify most of the colors used in the application, including the primary widget color choices in the UI.

Bug reports, feature requests, and general support inquiries should be archived in a GitHub issues thread. Any requests concerning this WIKI documentation should be posted as a new issue.